PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G186700.1
Common NameB456_013G186700, LOC105782989
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 212aa    MW: 23829.8 Da    PI: 4.8869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G186700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1976125355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++++g
  Gorai.013G186700.1  76 YRGVRKRP-WGKYAAEIRDSTRNG--ERVWLGTFDTAEAAALAYDQAALAMRG 125
                         9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-3175134IPR001471AP2/ERF domain
PfamPF008475.6E-1475125IPR001471AP2/ERF domain
PROSITE profilePS5103223.20975133IPR001471AP2/ERF domain
SMARTSM003801.6E-3675139IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2376134IPR016177DNA-binding domain
PRINTSPR003677.3E-117687IPR001471AP2/ERF domain
CDDcd000181.37E-1876133No hitNo description
PRINTSPR003677.3E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDSSFFHYPN LHFSPESSSS SYVSQALPFN ENDSQEMLLL GVLNQAPAPA ENSIDTASVN  60
WTSRDEHEVN SKEVSYRGVR KRPWGKYAAE IRDSTRNGER VWLGTFDTAE AAALAYDQAA  120
LAMRGSMAIL NFPMDEVYKS LLEMNYGFEE GCSPVLTMKK RYSMKGKRSG KKKIIKKEKE  180
SMEVENIIVL EDLGADYLEE LLSISESATR W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2776134361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463592.11e-156PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC83e-64ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2VHA21e-156A0A0D2VHA2_G
STRINGPOPTR_0013s04240.16e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-47ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]